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Units","topics":["compatible.unitname","harmonise.unitname","harmonize.unitname","methods.unitname","print.unitname","rescale.unitname","summary.unitname"]},{"page":"metric.object","title":"Distance Metric","topics":["metric.object"]},{"page":"midpoints.psp","title":"Midpoints of Line Segment Pattern","topics":["midpoints.psp"]},{"page":"MinkowskiSum","title":"Minkowski Sum of Windows","topics":["%(+)%","dilationAny","MinkowskiSum"]},{"page":"multiplicity.ppp","title":"Count Multiplicity of Duplicate Points","topics":["multiplicity","multiplicity.data.frame","multiplicity.default","multiplicity.ppp","multiplicity.ppx"]},{"page":"nearest.raster.point","title":"Find Pixel Nearest to a Given Point","topics":["nearest.raster.point"]},{"page":"nearestsegment","title":"Find Line Segment Nearest to Each Point","topics":["nearestsegment"]},{"page":"nearestValue","title":"Image of Nearest Defined Pixel Value","topics":["nearestValue"]},{"page":"nestsplit","title":"Nested Split","topics":["nestsplit"]},{"page":"nncross","title":"Nearest Neighbours Between Two Patterns","topics":["nncross","nncross.default","nncross.ppp"]},{"page":"nncross.pp3","title":"Nearest Neighbours Between Two Patterns in 3D","topics":["nncross.pp3"]},{"page":"nncross.ppx","title":"Nearest Neighbours Between Two Patterns in Any Dimensions","topics":["nncross.ppx"]},{"page":"nndist","title":"Nearest neighbour distances","topics":["nndist","nndist.default","nndist.ppp"]},{"page":"nndist.pp3","title":"Nearest neighbour distances in three dimensions","topics":["nndist.pp3"]},{"page":"nndist.ppx","title":"Nearest Neighbour Distances in Any Dimensions","topics":["nndist.ppx"]},{"page":"nndist.psp","title":"Nearest neighbour distances between line segments","topics":["nndist.psp"]},{"page":"nnfun","title":"Nearest Neighbour Index Map as a Function","topics":["nnfun","nnfun.ppp","nnfun.psp"]},{"page":"nnmap","title":"K-th Nearest Point Map","topics":["nnmap"]},{"page":"nnmark","title":"Mark of Nearest Neighbour","topics":["nnmark"]},{"page":"nnwhich","title":"Nearest neighbour","topics":["nnwhich","nnwhich.default","nnwhich.ppp"]},{"page":"nnwhich.pp3","title":"Nearest neighbours in three dimensions","topics":["nnwhich.pp3"]},{"page":"nnwhich.ppx","title":"Nearest Neighbours in Any Dimensions","topics":["nnwhich.ppx"]},{"page":"nobjects","title":"Count Number of Geometrical Objects in a Spatial Dataset","topics":["nobjects","nobjects.ppp","nobjects.ppx","nobjects.psp","nobjects.tess"]},{"page":"npoints","title":"Number of Points in a Point Pattern","topics":["npoints","npoints.pp3","npoints.ppp","npoints.ppx"]},{"page":"nsegments","title":"Number of Line Segments in a Line Segment Pattern","topics":["nsegments","nsegments.psp"]},{"page":"nvertices","title":"Count Number of Vertices","topics":["nvertices","nvertices.default","nvertices.owin"]},{"page":"opening","title":"Morphological Opening","topics":["opening","opening.owin","opening.ppp","opening.psp"]},{"page":"overlap.owin","title":"Compute Area of Overlap","topics":["overlap.owin"]},{"page":"owin","title":"Create a Window","topics":["owin"]},{"page":"owin.object","title":"Class owin","topics":["owin.object"]},{"page":"owin2mask","title":"Convert Window to Binary Mask under Constraints","topics":["owin2mask"]},{"page":"padimage","title":"Pad the Border of a Pixel Image","topics":["padimage"]},{"page":"pairdist","title":"Pairwise distances","topics":["pairdist"]},{"page":"pairdist.default","title":"Pairwise distances","topics":["pairdist.default"]},{"page":"pairdist.pp3","title":"Pairwise distances in Three Dimensions","topics":["pairdist.pp3"]},{"page":"pairdist.ppp","title":"Pairwise distances","topics":["pairdist.ppp"]},{"page":"pairdist.ppx","title":"Pairwise Distances in Any Dimensions","topics":["pairdist.ppx"]},{"page":"pairdist.psp","title":"Pairwise distances between line segments","topics":["pairdist.psp"]},{"page":"perimeter","title":"Perimeter Length of Window","topics":["perimeter"]},{"page":"periodify","title":"Make Periodic Copies of a Spatial Pattern","topics":["periodify","periodify.owin","periodify.ppp","periodify.psp"]},{"page":"persp.im","title":"Perspective Plot of Pixel Image","topics":["persp.im"]},{"page":"persp.ppp","title":"Perspective Plot of Marked Point Pattern","topics":["persp.ppp"]},{"page":"perspPoints","title":"Draw Points or Lines on a Surface Viewed in Perspective","topics":["perspContour","perspLines","perspPoints","perspSegments"]},{"page":"pHcolourmap","title":"Colour Map for pH Values","topics":["pHcolour","pHcolourmap"]},{"page":"pixelcentres","title":"Extract Pixel Centres as Point Pattern","topics":["pixelcentres"]},{"page":"pixellate","title":"Convert Spatial Object to Pixel Image","topics":["pixellate"]},{"page":"pixellate.owin","title":"Convert Window to Pixel Image","topics":["pixellate.owin"]},{"page":"pixellate.ppp","title":"Convert Point Pattern to Pixel Image","topics":["as.im.ppp","pixellate.ppp"]},{"page":"pixellate.psp","title":"Convert Line Segment Pattern to Pixel Image","topics":["pixellate.psp"]},{"page":"pixelquad","title":"Quadrature Scheme Based on Pixel Grid","topics":["pixelquad"]},{"page":"plot.anylist","title":"Plot a List of Things","topics":["plot.anylist"]},{"page":"plot.colourmap","title":"Plot a Colour Map","topics":["plot.colourmap"]},{"page":"plot.hyperframe","title":"Plot Entries in a Hyperframe","topics":["plot.hyperframe"]},{"page":"plot.im","title":"Plot a Pixel Image","topics":["image.im","plot.im"]},{"page":"plot.imlist","title":"Plot a List of Images","topics":["image.imlist","image.listof","plot.imlist"]},{"page":"plot.layered","title":"Layered Plot","topics":["plot.layered"]},{"page":"plot.listof","title":"Plot a List of Things","topics":["plot.listof"]},{"page":"plot.onearrow","title":"Plot an Arrow","topics":["plot.onearrow"]},{"page":"plot.owin","title":"Plot a Spatial Window","topics":["plot.owin"]},{"page":"plot.pp3","title":"Plot a Three-Dimensional Point Pattern","topics":["plot.pp3"]},{"page":"plot.ppp","title":"plot a Spatial Point Pattern","topics":["plot.ppp"]},{"page":"plot.pppmatching","title":"Plot a Point Matching","topics":["plot.pppmatching"]},{"page":"plot.psp","title":"plot a Spatial Line Segment Pattern","topics":["plot.psp"]},{"page":"plot.quad","title":"Plot a Spatial Quadrature Scheme","topics":["plot.quad"]},{"page":"plot.quadratcount","title":"Plot Quadrat Counts","topics":["plot.quadratcount"]},{"page":"plot.solist","title":"Plot a List of Spatial Objects","topics":["plot.solist"]},{"page":"plot.splitppp","title":"Plot a List of Point Patterns","topics":["plot.splitppp"]},{"page":"plot.symbolmap","title":"Plot a Graphics Symbol Map","topics":["plot.symbolmap"]},{"page":"plot.tess","title":"Plot a Tessellation","topics":["plot.tess"]},{"page":"plot.textstring","title":"Plot a Text String","topics":["plot.textstring"]},{"page":"plot.texturemap","title":"Plot a Texture Map","topics":["plot.texturemap"]},{"page":"plot.yardstick","title":"Plot a Yardstick or Scale Bar","topics":["plot.yardstick"]},{"page":"pointsOnLines","title":"Place Points Evenly Along Specified Lines","topics":["pointsOnLines"]},{"page":"polartess","title":"Tessellation Using Polar Coordinates","topics":["polartess"]},{"page":"pp3","title":"Three Dimensional Point Pattern","topics":["pp3"]},{"page":"ppp","title":"Create a Point Pattern","topics":["ppp"]},{"page":"ppp.object","title":"Class of Point Patterns","topics":["ppp.object"]},{"page":"pppdist","title":"Distance Between Two Point Patterns","topics":["pppdist"]},{"page":"pppmatching","title":"Create a Point Matching","topics":["pppmatching"]},{"page":"pppmatching.object","title":"Class of Point 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Images","topics":["quantilefun.im"]},{"page":"quasirandom","title":"Quasirandom Patterns","topics":["Halton","Hammersley","quasirandom","vdCorput"]},{"page":"raster.x","title":"Cartesian Coordinates for a Pixel Raster","topics":["raster.x","raster.xy","raster.y"]},{"page":"rectdistmap","title":"Distance Map Using Rectangular Distance Metric","topics":["rectdistmap"]},{"page":"reflect","title":"Reflect In Origin","topics":["reflect","reflect.default","reflect.im"]},{"page":"regularpolygon","title":"Create A Regular Polygon","topics":["hexagon","regularpolygon"]},{"page":"relevel.im","title":"Reorder Levels of a Factor-Valued Image or Pattern","topics":["relevel.im","relevel.ppp","relevel.ppx"]},{"page":"Replace.im","title":"Reset Values in Subset of Image","topics":["[<-.im"]},{"page":"requireversion","title":"Require a Specific Version of a Package","topics":["requireversion"]},{"page":"rescale","title":"Convert dataset to another unit of length","topics":["rescale"]},{"page":"rescale.im","title":"Convert Pixel Image to Another Unit of Length","topics":["rescale.im"]},{"page":"rescale.owin","title":"Convert Window to Another Unit of Length","topics":["rescale.owin"]},{"page":"rescale.ppp","title":"Convert Point Pattern to Another Unit of Length","topics":["rescale.ppp"]},{"page":"rescale.psp","title":"Convert Line Segment Pattern to Another Unit of Length","topics":["rescale.psp"]},{"page":"rescue.rectangle","title":"Convert Window Back To Rectangle","topics":["rescue.rectangle"]},{"page":"restrict.colourmap","title":"Restrict a Colour Map to a Subset of Values","topics":["restrict.colourmap"]},{"page":"rev.colourmap","title":"Reverse the Colours in a Colour Map","topics":["rev.colourmap"]},{"page":"rexplode","title":"Explode a Point Pattern by Displacing Duplicated Points","topics":["rexplode","rexplode.ppp"]},{"page":"rgbim","title":"Create Colour-Valued Pixel Image","topics":["hsvim","rgbim"]},{"page":"ripras","title":"Estimate window from points alone","topics":["ripras"]},{"page":"rjitter","title":"Random Perturbation of a Point Pattern","topics":["rjitter","rjitter.ppp"]},{"page":"rlinegrid","title":"Generate grid of parallel lines with random displacement","topics":["rlinegrid"]},{"page":"rotate","title":"Rotate","topics":["rotate"]},{"page":"rotate.im","title":"Rotate a Pixel Image","topics":["rotate.im"]},{"page":"rotate.infline","title":"Rotate or Shift Infinite Lines","topics":["flipxy.infline","reflect.infline","rotate.infline","shift.infline"]},{"page":"rotate.owin","title":"Rotate a Window","topics":["rotate.owin"]},{"page":"rotate.ppp","title":"Rotate a Point Pattern","topics":["rotate.ppp"]},{"page":"rotate.psp","title":"Rotate a Line Segment Pattern","topics":["rotate.psp"]},{"page":"round.ppp","title":"Apply Numerical Rounding to Spatial Coordinates","topics":["round.pp3","round.ppp","round.ppx"]},{"page":"rounding.ppp","title":"Detect Numerical Rounding","topics":["rounding.pp3","rounding.ppp","rounding.ppx"]},{"page":"rQuasi","title":"Generate Quasirandom Point Pattern in Given Window","topics":["rQuasi"]},{"page":"rsyst","title":"Simulate systematic random point pattern","topics":["rsyst"]},{"page":"run.simplepanel","title":"Run Point-and-Click Interface","topics":["clear.simplepanel","redraw.simplepanel","run.simplepanel"]},{"page":"runifrect","title":"Generate N Uniform Random Points in a Rectangle","topics":["runifrect"]},{"page":"scalardilate","title":"Apply Scalar Dilation","topics":["scalardilate","scalardilate.default","scalardilate.im","scalardilate.owin","scalardilate.ppp","scalardilate.psp"]},{"page":"scaletointerval","title":"Rescale Data to Lie Between Specified Limits","topics":["scaletointerval","scaletointerval.default","scaletointerval.im"]},{"page":"scanpp","title":"Read Point Pattern From Data File","topics":["scanpp"]},{"page":"selfcrossing.psp","title":"Crossing Points in a Line Segment Pattern","topics":["selfcrossing.psp"]},{"page":"selfcut.psp","title":"Cut Line Segments Where They Intersect","topics":["selfcut.psp"]},{"page":"sessionLibs","title":"Print Names and Version Numbers of Libraries Loaded","topics":["sessionLibs"]},{"page":"setcov","title":"Set Covariance of a Window","topics":["setcov"]},{"page":"shift","title":"Apply Vector Translation","topics":["shift"]},{"page":"shift.im","title":"Apply Vector Translation To Pixel Image","topics":["shift.im"]},{"page":"shift.owin","title":"Apply Vector Translation To Window","topics":["shift.owin"]},{"page":"shift.ppp","title":"Apply Vector Translation To Point Pattern","topics":["shift.ppp"]},{"page":"shift.ppx","title":"Apply Vector Translation To Box Or Point Pattern In Arbitrary Dimension","topics":["shift.boxx","shift.ppx"]},{"page":"shift.psp","title":"Apply Vector Translation To Line Segment Pattern","topics":["shift.psp"]},{"page":"sidelengths.owin","title":"Side Lengths of Enclosing Rectangle of a Window","topics":["shortside.owin","sidelengths.owin"]},{"page":"simplepanel","title":"Simple Point-and-Click Interface Panels","topics":["grow.simplepanel","simplepanel"]},{"page":"simplify.owin","title":"Approximate a Polygon by a Simpler Polygon","topics":["simplify.owin"]},{"page":"solapply","title":"Apply a Function Over a List and Obtain a List of Objects","topics":["anylapply","solapply"]},{"page":"solist","title":"List of Two-Dimensional Spatial Objects","topics":["solist"]},{"page":"solutionset","title":"Evaluate Logical Expression Involving Pixel Images and Return Region Where Expression is True","topics":["solutionset"]},{"page":"spatdim","title":"Spatial Dimension of a Dataset","topics":["spatdim"]},{"page":"spatstat.options","title":"Internal Options in Spatstat Package","topics":["reset.spatstat.options","spatstat.options"]},{"page":"split.hyperframe","title":"Divide Hyperframe Into Subsets and Reassemble","topics":["split.hyperframe","split<-.hyperframe"]},{"page":"split.im","title":"Divide Image Into Sub-images","topics":["split.im"]},{"page":"split.ppp","title":"Divide Point Pattern into Sub-patterns","topics":["split.ppp","split<-.ppp"]},{"page":"split.ppx","title":"Divide Multidimensional Point Pattern into Sub-patterns","topics":["split.ppx"]},{"page":"spokes","title":"Spokes pattern of dummy points","topics":["spokes"]},{"page":"square","title":"Square Window","topics":["square","unit.square"]},{"page":"stratrand","title":"Stratified random point pattern","topics":["stratrand"]},{"page":"subset.hyperframe","title":"Subset of Hyperframe Satisfying A Condition","topics":["subset.hyperframe"]},{"page":"subset.ppp","title":"Subset of Point Pattern Satisfying A Condition","topics":["subset.pp3","subset.ppp","subset.ppx"]},{"page":"subset.psp","title":"Subset of Line Segment Satisfying A Condition","topics":["subset.psp"]},{"page":"summary.anylist","title":"Summary of a List of Things","topics":["summary.anylist"]},{"page":"summary.distfun","title":"Summarizing a Function of Spatial Location","topics":["summary.distfun","summary.funxy"]},{"page":"summary.im","title":"Summarizing a Pixel Image","topics":["print.summary.im","summary.im"]},{"page":"summary.listof","title":"Summary of a List of Things","topics":["summary.listof"]},{"page":"summary.owin","title":"Summary of a Spatial Window","topics":["summary.owin"]},{"page":"summary.ppp","title":"Summary of a Point Pattern Dataset","topics":["summary.ppp"]},{"page":"summary.psp","title":"Summary of a Line Segment Pattern Dataset","topics":["summary.psp"]},{"page":"summary.quad","title":"Summarizing a Quadrature Scheme","topics":["print.summary.quad","summary.quad"]},{"page":"summary.solist","title":"Summary of a List of Spatial Objects","topics":["summary.solist"]},{"page":"summary.splitppp","title":"Summary of a Split Point Pattern","topics":["summary.splitppp"]},{"page":"superimpose","title":"Superimpose Several Geometric Patterns","topics":["superimpose","superimpose.default","superimpose.ppp","superimpose.ppplist","superimpose.psp","superimpose.splitppp"]},{"page":"symbolmap","title":"Graphics Symbol Map","topics":["symbolmap"]},{"page":"tess","title":"Create a Tessellation","topics":["tess"]},{"page":"test.crossing.psp","title":"Check Whether Segments Cross","topics":["test.crossing.psp","test.selfcrossing.psp"]},{"page":"text.ppp","title":"Add Text Labels to Spatial Pattern","topics":["text.ppp","text.psp"]},{"page":"texturemap","title":"Texture Map","topics":["texturemap"]},{"page":"textureplot","title":"Plot Image or Tessellation Using Texture Fill","topics":["textureplot"]},{"page":"tile.areas","title":"Compute Areas of Tiles in a Tessellation","topics":["tile.areas"]},{"page":"tileindex","title":"Determine Which Tile Contains Each Given Point","topics":["tileindex"]},{"page":"tilenames","title":"Names of Tiles in a Tessellation","topics":["tilenames","tilenames.tess","tilenames<-","tilenames<-.tess"]},{"page":"tiles","title":"Extract List of Tiles in a Tessellation","topics":["tiles"]},{"page":"tiles.empty","title":"Check For Empty Tiles in a Tessellation","topics":["tiles.empty"]},{"page":"timed","title":"Record the Computation Time","topics":["timed"]},{"page":"timeTaken","title":"Extract the Total Computation Time","topics":["timeTaken"]},{"page":"transmat","title":"Convert Pixel Array Between Different Conventions","topics":["transmat"]},{"page":"triangulate.owin","title":"Decompose Window into Triangles","topics":["triangulate.owin"]},{"page":"trim.rectangle","title":"Cut margins from rectangle","topics":["trim.rectangle"]},{"page":"tweak.colourmap","title":"Change Colour Values in a Colour Map","topics":["tweak.colourmap"]},{"page":"union.quad","title":"Union of Data and Dummy Points","topics":["union.quad"]},{"page":"unique.ppp","title":"Extract Unique Points from a Spatial Point Pattern","topics":["unique.ppp","unique.ppx"]},{"page":"uniquemap.ppp","title":"Map Duplicate Entries to Unique Entries","topics":["uniquemap.lpp","uniquemap.ppp","uniquemap.ppx"]},{"page":"unitname","title":"Name for Unit of Length","topics":["unitname","unitname.im","unitname.owin","unitname.ppp","unitname.psp","unitname.quad","unitname.tess","unitname<-","unitname<-.im","unitname<-.owin","unitname<-.ppp","unitname<-.psp","unitname<-.quad","unitname<-.tess"]},{"page":"unmark","title":"Remove Marks","topics":["unmark","unmark.ppp","unmark.ppx","unmark.psp","unmark.splitppp"]},{"page":"unstack.ppp","title":"Separate Multiple Columns of Marks","topics":["unstack.ppp","unstack.psp","unstack.tess"]},{"page":"unstack.solist","title":"Unstack Each Spatial Object in a List of Objects","topics":["unstack.layered","unstack.solist"]},{"page":"update.symbolmap","title":"Update a Graphics Symbol Map.","topics":["update.symbolmap"]},{"page":"venn.tess","title":"Tessellation Delimited by Several Sets","topics":["venn.tess"]},{"page":"vertices","title":"Vertices of a Window","topics":["vertices","vertices.owin"]},{"page":"volume","title":"Volume of an Object","topics":["volume"]},{"page":"where.max","title":"Find Location of Maximum in a Pixel Image","topics":["where.max","where.min"]},{"page":"whichhalfplane","title":"Test Which Side of Infinite Line a Point Falls On","topics":["whichhalfplane"]},{"page":"Window","title":"Extract or Change the Window of a Spatial Object","topics":["Window","Window.im","Window.ppp","Window.psp","Window.quad","Window<-","Window<-.im","Window<-.ppp","Window<-.psp","Window<-.quad"]},{"page":"Window.tess","title":"Extract Window of Spatial Object","topics":["Window.distfun","Window.funxy","Window.layered","Window.nnfun","Window.quadratcount","Window.tess"]},{"page":"with.hyperframe","title":"Evaluate an Expression in Each Row of a Hyperframe","topics":["with.hyperframe"]},{"page":"yardstick","title":"Text, Arrow or Scale Bar in a Diagram","topics":["onearrow","textstring","yardstick"]},{"page":"zapsmall.im","title":"Rounding of Pixel Values","topics":["zapsmall.im"]}],"_readme":"https://github.com/spatstat/spatstat.geom/raw/HEAD/README.md","_rundeps":["deldir","lattice","Matrix","polyclip","spatstat.data","spatstat.univar","spatstat.utils"],"_score":11.98119234320078,"_indexed":true,"_nocasepkg":"spatstat.geom","_universes":["spatstat","baddstats"],"_binaries":[]} {"Package":"spatstat.explore","Version":"3.3-3.001","Date":"2024-12-27","Title":"Exploratory Data Analysis for the 'spatstat' Family","Authors@R":"c(person(\"Adrian\", \"Baddeley\", \nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"Adrian.Baddeley@curtin.edu.au\",\ncomment = c(ORCID=\"0000-0001-9499-8382\")),\nperson(\"Rolf\", \"Turner\",\nrole = c(\"aut\", \"cph\"),\nemail=\"rolfturner@posteo.net\",\ncomment=c(ORCID=\"0000-0001-5521-5218\")),\nperson(\"Ege\", \"Rubak\",\nrole = c(\"aut\", \"cph\"),\nemail = \"rubak@math.aau.dk\",\ncomment=c(ORCID=\"0000-0002-6675-533X\")),\nperson(\"Kasper\", \"Klitgaard Berthelsen\",\nrole = \"ctb\"),\nperson(\"Warick\", \"Brown\",\nrole = \"cph\"),\nperson(\"Achmad\", \"Choiruddin\",\nrole = \"ctb\"),\nperson(\"Jean-Francois\", \"Coeurjolly\",\nrole = \"ctb\"),\nperson(\"Ottmar\", \"Cronie\",\nrole = \"ctb\"),\nperson(\"Tilman\", \"Davies\",\nrole = c(\"ctb\", \"cph\")),\nperson(\"Julian\", \"Gilbey\",\nrole = \"ctb\"),\nperson(\"Jonatan\", \"Gonzalez\",\nrole = \"ctb\"),\nperson(\"Yongtao\", \"Guan\",\nrole = \"ctb\"),\nperson(\"Ute\", \"Hahn\",\nrole = \"ctb\"),\nperson(\"Kassel\", \"Hingee\",\nrole = c(\"ctb\", \"cph\")),\nperson(\"Abdollah\", \"Jalilian\",\nrole = \"ctb\"),\nperson(\"Frederic\", \"Lavancier\",\nrole = \"ctb\"),\nperson(\"Marie-Colette\", \"van Lieshout\",\nrole = c(\"ctb\", \"cph\")),\nperson(\"Greg\", \"McSwiggan\",\nrole = \"ctb\"),\nperson(\"Robin K\", \"Milne\",\nrole = \"cph\"),\nperson(\"Tuomas\", \"Rajala\",\nrole = \"ctb\"),\nperson(\"Suman\", \"Rakshit\",\nrole = c(\"ctb\", \"cph\")),\nperson(\"Dominic\", \"Schuhmacher\",\nrole = \"ctb\"),\nperson(\"Rasmus\", \"Plenge Waagepetersen\",\nrole = \"ctb\"),\nperson(\"Hangsheng\", \"Wang\",\nrole = \"ctb\"))","Maintainer":"Adrian Baddeley ","Description":"Functionality for exploratory data analysis and\nnonparametric analysis of spatial data, mainly spatial point\npatterns, in the 'spatstat' family of packages. (Excludes\nanalysis of spatial data on a linear network, which is covered\nby the separate package 'spatstat.linnet'.) Methods include\nquadrat counts, K-functions and their simulation envelopes,\nnearest neighbour distance and empty space statistics, Fry\nplots, pair correlation function, kernel smoothed intensity,\nrelative risk estimation with cross-validated bandwidth\nselection, mark correlation functions, segregation indices,\nmark dependence diagnostics, and kernel estimates of covariate\neffects. Formal hypothesis tests of random pattern\n(chi-squared, Kolmogorov-Smirnov, Monte Carlo,\nDiggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte\nCarlo) and tests for covariate effects\n(Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also\nsupported.","License":"GPL (>= 2)","URL":"http://spatstat.org/","NeedsCompilation":"yes","ByteCompile":"true","BugReports":"https://github.com/spatstat/spatstat.explore/issues","Repository":"https://spatstat.r-universe.dev","RemoteUrl":"https://github.com/spatstat/spatstat.explore","RemoteRef":"HEAD","RemoteSha":"e69742955558ca4e2ecefd5b31476a213ecbd8aa","Packaged":{"Date":"2024-12-27 08:43:04 UTC","User":"root"},"Author":"Adrian Baddeley [aut, cre, cph]\n(),\nRolf Turner [aut, cph] (),\nEge Rubak [aut, cph] (),\nKasper Klitgaard Berthelsen [ctb],\nWarick Brown [cph],\nAchmad Choiruddin [ctb],\nJean-Francois Coeurjolly [ctb],\nOttmar Cronie [ctb],\nTilman Davies [ctb, cph],\nJulian Gilbey [ctb],\nJonatan Gonzalez [ctb],\nYongtao Guan 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Result of Scan Test","topics":["as.im.scan.test","plot.scan.test"]},{"page":"plot.ssf","title":"Plot a Spatially Sampled Function","topics":["contour.ssf","image.ssf","plot.ssf"]},{"page":"plot.studpermutest","title":"Plot a Studentised Permutation Test","topics":["plot.studpermutest"]},{"page":"pool","title":"Pool Data","topics":["pool"]},{"page":"pool.anylist","title":"Pool Data from a List of Objects","topics":["pool.anylist"]},{"page":"pool.envelope","title":"Pool Data from Several Envelopes","topics":["pool.envelope"]},{"page":"pool.fasp","title":"Pool Data from Several Function Arrays","topics":["pool.fasp"]},{"page":"pool.fv","title":"Pool Several Functions","topics":["pool.fv"]},{"page":"pool.quadrattest","title":"Pool Several Quadrat Tests","topics":["pool.quadrattest"]},{"page":"pool.rat","title":"Pool Data from Several Ratio Objects","topics":["pool.rat"]},{"page":"PPversion","title":"Transform a Function into its P-P or Q-Q 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Reduction","topics":["sdrPredict"]},{"page":"segregation.test","title":"Test of Spatial Segregation of Types","topics":["segregation.test","segregation.test.ppp"]},{"page":"sharpen","title":"Data Sharpening of Point Pattern","topics":["sharpen","sharpen.ppp"]},{"page":"Smooth","title":"Spatial smoothing of data","topics":["Smooth"]},{"page":"Smooth.fv","title":"Apply Smoothing to Function Values","topics":["Smooth.fv"]},{"page":"Smooth.ppp","title":"Spatial smoothing of observations at irregular points","topics":["markmean","markvar","Smooth.ppp"]},{"page":"Smooth.ssf","title":"Smooth a Spatially Sampled Function","topics":["Smooth.ssf"]},{"page":"Smoothfun.ppp","title":"Smooth Interpolation of Marks as a Spatial Function","topics":["Smoothfun","Smoothfun.ppp"]},{"page":"SmoothHeat","title":"Spatial Smoothing of Data by Diffusion","topics":["SmoothHeat"]},{"page":"SmoothHeat.ppp","title":"Spatial Smoothing of Observations using Diffusion Estimate of Density","topics":["SmoothHeat.ppp"]},{"page":"spatcov","title":"Estimate the Spatial Covariance Function of a Random Field","topics":["spatcov"]},{"page":"spatialcdf","title":"Spatial Cumulative Distribution Function","topics":["spatialcdf"]},{"page":"SpatialMedian.ppp","title":"Spatially Weighted Median of Values at Points","topics":["SpatialMedian.ppp"]},{"page":"SpatialQuantile","title":"Spatially Weighted Median or Quantile","topics":["SpatialMedian","SpatialQuantile"]},{"page":"SpatialQuantile.ppp","title":"Spatially Weighted Quantile of Values at Points","topics":["SpatialQuantile.ppp"]},{"page":"ssf","title":"Spatially Sampled Function","topics":["ssf"]},{"page":"stienen","title":"Stienen Diagram","topics":["stienen","stienenSet"]},{"page":"studpermu.test","title":"Studentised Permutation Test","topics":["studpermu.test"]},{"page":"subspaceDistance","title":"Distance Between Linear Spaces","topics":["subspaceDistance"]},{"page":"thresholdCI","title":"Confidence Interval for Threshold of Numerical Predictor","topics":["thresholdCI"]},{"page":"thresholdSelect","title":"Select Threshold to Convert Numerical Predictor to Binary Predictor","topics":["thresholdSelect"]},{"page":"transect.im","title":"Pixel Values Along a Transect","topics":["transect.im"]},{"page":"Tstat","title":"Third order summary statistic","topics":["Tstat"]},{"page":"varblock","title":"Estimate Variance of Summary Statistic by Subdivision","topics":["varblock"]},{"page":"Window.quadrattest","title":"Extract Window of Spatial Object","topics":["Window.quadrattest"]},{"page":"with.fv","title":"Evaluate an Expression in a Function Table","topics":["with.fv"]},{"page":"with.ssf","title":"Evaluate Expression in a Spatially Sampled Function","topics":["apply.ssf","with.ssf"]}],"_readme":"https://github.com/spatstat/spatstat.explore/raw/HEAD/README.md","_rundeps":["abind","deldir","goftest","lattice","Matrix","nlme","polyclip","spatstat.data","spatstat.geom","spatstat.random","spatstat.sparse","spatstat.univar","spatstat.utils","tensor"],"_score":10.05358930251365,"_indexed":true,"_nocasepkg":"spatstat.explore","_universes":["spatstat","baddstats"],"_previous":"3.3-3","_binaries":[]} {"Package":"spatstat.model","Version":"3.3-3.001","Date":"2024-12-03","Title":"Parametric Statistical Modelling and Inference for the\n'spatstat' Family","Authors@R":"c(person(\"Adrian\", \"Baddeley\", \nrole = c(\"aut\", \"cre\", \"cph\"),\nemail = \"Adrian.Baddeley@curtin.edu.au\",\ncomment = c(ORCID=\"0000-0001-9499-8382\")),\nperson(\"Rolf\", \"Turner\",\nrole = c(\"aut\", \"cph\"),\nemail=\"rolfturner@posteo.net\",\ncomment=c(ORCID=\"0000-0001-5521-5218\")),\nperson(\"Ege\", \"Rubak\",\nrole = c(\"aut\", \"cph\"),\nemail = \"rubak@math.aau.dk\",\ncomment=c(ORCID=\"0000-0002-6675-533X\")),\nperson(\"Kasper\", \"Klitgaard Berthelsen\",\nrole = \"ctb\"),\nperson(\"Achmad\", \"Choiruddin\",\nrole = c(\"ctb\", \"cph\")),\nperson(\"Jean-Francois\", \"Coeurjolly\",\nrole = \"ctb\"),\nperson(\"Ottmar\", \"Cronie\",\nrole = \"ctb\"),\nperson(\"Tilman\", \"Davies\",\nrole = \"ctb\"),\nperson(\"Julian\", \"Gilbey\",\nrole = \"ctb\"),\nperson(\"Yongtao\", \"Guan\",\nrole = \"ctb\"),\nperson(\"Ute\", \"Hahn\",\nrole = \"ctb\"),\nperson(\"Martin\", \"Hazelton\",\nrole = \"ctb\"),\nperson(\"Kassel\", \"Hingee\",\nrole = \"ctb\"),\nperson(\"Abdollah\", \"Jalilian\",\nrole = \"ctb\"),\nperson(\"Frederic\", \"Lavancier\",\nrole = \"ctb\"),\nperson(\"Marie-Colette\", \"van Lieshout\",\nrole = \"ctb\"),\nperson(\"Bethany\", \"Macdonald\",\nrole = \"ctb\"),\nperson(\"Greg\", \"McSwiggan\",\nrole = \"ctb\"),\nperson(\"Tuomas\", \"Rajala\",\nrole = \"ctb\"),\nperson(\"Suman\", \"Rakshit\",\nrole = c(\"ctb\", \"cph\")),\nperson(\"Dominic\", \"Schuhmacher\",\nrole = \"ctb\"),\nperson(\"Rasmus\", \"Plenge Waagepetersen\",\nrole = \"ctb\"),\nperson(\"Hangsheng\", \"Wang\",\nrole = \"ctb\"))","Maintainer":"Adrian Baddeley ","Description":"Functionality for parametric statistical modelling and\ninference for spatial data, mainly spatial point patterns, in\nthe 'spatstat' family of packages. (Excludes analysis of\nspatial data on a linear network, which is covered by the\nseparate package 'spatstat.linnet'.) Supports parametric\nmodelling, formal statistical inference, and model validation.\nParametric models include Poisson point processes, Cox point\nprocesses, Neyman-Scott cluster processes, Gibbs point\nprocesses and determinantal point processes. Models can be\nfitted to data using maximum likelihood, maximum\npseudolikelihood, maximum composite likelihood and the method\nof minimum contrast. Fitted models can be simulated and\npredicted. Formal inference includes hypothesis tests (quadrat\ncounting tests, Cressie-Read tests, Clark-Evans test, Berman\ntest, Diggle-Cressie-Loosmore-Ford test, scan test, studentised\npermutation test, segregation test, ANOVA tests of fitted\nmodels, adjusted composite likelihood ratio test, envelope\ntests, Dao-Genton test, balanced independent two-stage test),\nconfidence intervals for parameters, and prediction intervals\nfor point counts. Model validation techniques include leverage,\ninfluence, partial residuals, added variable plots, diagnostic\nplots, pseudoscore residual plots, model compensators and Q-Q\nplots.","License":"GPL (>= 2)","URL":"http://spatstat.org/","NeedsCompilation":"yes","ByteCompile":"true","BugReports":"https://github.com/spatstat/spatstat.model/issues","Repository":"https://spatstat.r-universe.dev","RemoteUrl":"https://github.com/spatstat/spatstat.model","RemoteRef":"HEAD","RemoteSha":"994a572a75d9137979252481214bc98e709589db","Packaged":{"Date":"2025-01-02 06:13:07 UTC","User":"root"},"Author":"Adrian Baddeley [aut, cre, cph]\n(),\nRolf Turner [aut, cph] (),\nEge Rubak [aut, cph] (),\nKasper Klitgaard Berthelsen [ctb],\nAchmad Choiruddin [ctb, cph],\nJean-Francois Coeurjolly [ctb],\nOttmar Cronie [ctb],\nTilman Davies [ctb],\nJulian Gilbey [ctb],\nYongtao Guan [ctb],\nUte Hahn [ctb],\nMartin Hazelton [ctb],\nKassel Hingee [ctb],\nAbdollah Jalilian [ctb],\nFrederic Lavancier [ctb],\nMarie-Colette van Lieshout [ctb],\nBethany Macdonald [ctb],\nGreg McSwiggan [ctb],\nTuomas Rajala [ctb],\nSuman Rakshit [ctb, cph],\nDominic Schuhmacher [ctb],\nRasmus Plenge Waagepetersen [ctb],\nHangsheng Wang [ctb]","MD5sum":"6d809245cf3033b93b42e5768896a228","_user":"spatstat","_type":"src","_file":"spatstat.model_3.3-3.001.tar.gz","_fileid":"1c247b07771bf8a05d61028507bc1da9fc789ab5a01b992e976e4bf92d1b506c","_filesize":2705068,"_sha256":"1c247b07771bf8a05d61028507bc1da9fc789ab5a01b992e976e4bf92d1b506c","_created":"2025-01-02T06:13:07.000Z","_published":"2025-01-02T06:20:49.701Z","_upstream":"https://github.com/spatstat/spatstat.model","_commit":{"id":"994a572a75d9137979252481214bc98e709589db","author":"Adrian Baddeley ","committer":"Adrian Baddeley ","message":"Improved warning message about splitting quadscheme\n","time":1733213486},"_maintainer":{"name":"Adrian Baddeley","email":"adrian.baddeley@curtin.edu.au","login":"baddstats","uuid":7161794,"orcid":"0000-0001-9499-8382"},"_distro":"noble","_host":"GitHub-Actions","_status":"success","_pkgdocs":"skipped","_winbinary":"success","_macbinary":"success","_wasmbinary":"none","_linuxdevel":"success","_windevel":"success","_buildurl":"https://github.com/r-universe/spatstat/actions/runs/12578319452","_registered":true,"_dependencies":[{"package":"R","version":">= 3.5.0","role":"Depends"},{"package":"spatstat.data","version":">= 3.1-4","role":"Depends"},{"package":"spatstat.univar","version":">= 3.1-1","role":"Depends"},{"package":"spatstat.geom","version":">= 3.3-4","role":"Depends"},{"package":"spatstat.random","version":">= 3.3-2","role":"Depends"},{"package":"spatstat.explore","version":">= 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Point Process Model is Marked","topics":["is.marked.ppm"]},{"page":"is.multitype.ppm","title":"Test Whether A Point Process Model is Multitype","topics":["is.multitype.ppm"]},{"page":"is.poissonclusterprocess","title":"Recognise Poisson Cluster Process Models","topics":["is.poissonclusterprocess","is.poissonclusterprocess.default","is.poissonclusterprocess.kppm","is.poissonclusterprocess.zclustermodel"]},{"page":"is.ppm","title":"Test Whether An Object Is A Fitted Point Process Model","topics":["is.kppm","is.lppm","is.ppm","is.slrm"]},{"page":"is.stationary.ppm","title":"Recognise Stationary and Poisson Point Process Models","topics":["is.poisson.interact","is.poisson.kppm","is.poisson.ppm","is.poisson.slrm","is.stationary.detpointprocfamily","is.stationary.dppm","is.stationary.kppm","is.stationary.ppm","is.stationary.slrm"]},{"page":"isf.object","title":"Interaction Structure Family Objects","topics":["isf.object"]},{"page":"Kcom","title":"Model Compensator of K Function","topics":["Kcom"]},{"page":"Kmodel","title":"K Function or Pair Correlation Function of a Point Process Model","topics":["Kmodel","pcfmodel"]},{"page":"Kmodel.dppm","title":"K-function or Pair Correlation Function of a Determinantal Point Process Model","topics":["Kmodel.detpointprocfamily","Kmodel.dppm","pcfmodel.detpointprocfamily","pcfmodel.dppm"]},{"page":"Kmodel.kppm","title":"K Function or Pair Correlation Function of Cluster Model or Cox model","topics":["Kmodel.kppm","pcfmodel.kppm"]},{"page":"Kmodel.ppm","title":"K Function or Pair Correlation Function of Gibbs Point Process model","topics":["Kmodel.ppm","pcfmodel.ppm"]},{"page":"kppm","title":"Fit Cluster or Cox Point Process Model","topics":["kppm","kppm.formula","kppm.ppp","kppm.quad"]},{"page":"Kres","title":"Residual K Function","topics":["Kres"]},{"page":"LambertW","title":"Lambert's W Function","topics":["LambertW"]},{"page":"LennardJones","title":"The Lennard-Jones Potential","topics":["LennardJones"]},{"page":"leverage.ppm","title":"Leverage Measure for Spatial Point Process Model","topics":["leverage","leverage.ppm"]},{"page":"leverage.slrm","title":"Leverage and Influence Diagnostics for Spatial Logistic Regression","topics":["dfbetas.slrm","dffit.slrm","influence.slrm","leverage.slrm"]},{"page":"lgcp.estK","title":"Fit a Log-Gaussian Cox Point Process by Minimum Contrast","topics":["lgcp.estK"]},{"page":"lgcp.estpcf","title":"Fit a Log-Gaussian Cox Point Process by Minimum Contrast","topics":["lgcp.estpcf"]},{"page":"logLik.dppm","title":"Log Likelihood and AIC for Fitted Determinantal Point Process Model","topics":["AIC.dppm","extractAIC.dppm","logLik.dppm","nobs.dppm"]},{"page":"logLik.kppm","title":"Log Likelihood and AIC for Fitted Cox or Cluster Point Process Model","topics":["AIC.kppm","extractAIC.kppm","logLik.kppm","nobs.kppm"]},{"page":"logLik.mppm","title":"Log Likelihood and AIC for Multiple Point Process Model","topics":["AIC.mppm","extractAIC.mppm","getCall.mppm","logLik.mppm","nobs.mppm","terms.mppm"]},{"page":"logLik.ppm","title":"Log Likelihood and AIC for Point Process Model","topics":["AIC.ppm","deviance.ppm","extractAIC.ppm","logLik.ppm","nobs.ppm"]},{"page":"logLik.slrm","title":"Loglikelihood of Spatial Logistic Regression","topics":["logLik.slrm"]},{"page":"lurking","title":"Lurking Variable Plot","topics":["lurking","lurking.ppm","lurking.ppp"]},{"page":"lurking.mppm","title":"Lurking Variable Plot for Multiple Point Patterns","topics":["lurking.mppm"]},{"page":"matclust.estK","title":"Fit the Matern Cluster Point Process by Minimum Contrast","topics":["matclust.estK"]},{"page":"matclust.estpcf","title":"Fit the Matern Cluster Point Process by Minimum Contrast Using Pair Correlation","topics":["matclust.estpcf"]},{"page":"measureContinuous","title":"Discrete and Continuous Components of a Measure","topics":["measureContinuous","measureDiscrete"]},{"page":"measureVariation","title":"Positive and Negative Parts, and Variation, of a Measure","topics":["measureNegative","measurePositive","measureVariation","totalVariation"]},{"page":"measureWeighted","title":"Weighted Version of a Measure","topics":["measureWeighted"]},{"page":"methods.dppm","title":"Methods for Determinantal Point Process Models","topics":["coef.dppm","formula.dppm","labels.dppm","methods.dppm","print.dppm","terms.dppm"]},{"page":"methods.fii","title":"Methods for Fitted Interactions","topics":["coef.fii","coef.summary.fii","coef<-.fii","methods.fii","plot.fii","print.fii","print.summary.fii","summary.fii"]},{"page":"methods.influence.ppm","title":"Methods for Influence Objects","topics":["as.owin.influence.ppm","as.ppp.influence.ppm","domain.influence.ppm","integral.influence.ppm","methods.influence.ppm","Smooth.influence.ppm","Window.influence.ppm"]},{"page":"methods.kppm","title":"Methods for Cluster Point Process Models","topics":["coef.kppm","formula.kppm","labels.kppm","methods.kppm","print.kppm","terms.kppm"]},{"page":"methods.leverage.ppm","title":"Methods for Leverage Objects","topics":["as.im.leverage.ppm","as.owin.leverage.ppm","domain.leverage.ppm","integral.leverage.ppm","mean.leverage.ppm","methods.leverage.ppm","Smooth.leverage.ppm","Window.leverage.ppm"]},{"page":"methods.objsurf","title":"Methods for Objective Function Surfaces","topics":["contour.objsurf","image.objsurf","methods.objsurf","persp.objsurf","plot.objsurf","print.objsurf","print.summary.objsurf","summary.objsurf"]},{"page":"methods.slrm","title":"Methods for Spatial Logistic Regression Models","topics":["deviance.slrm","formula.slrm","labels.slrm","methods.slrm","print.slrm","summary.slrm","terms.slrm","update.slrm"]},{"page":"methods.traj","title":"Methods for Trajectories of Function Evaluations","topics":["lines.traj","methods.traj","plot.traj","print.traj"]},{"page":"methods.zclustermodel","title":"Methods for Cluster Models","topics":["clusterradius.zclustermodel","intensity.zclustermodel","Kmodel.zclustermodel","methods.zclustermodel","pcfmodel.zclustermodel","predict.zclustermodel","print.zclustermodel","reach.zclustermodel"]},{"page":"methods.zgibbsmodel","title":"Methods for Gibbs Models","topics":["as.interact.zgibbsmodel","as.isf.zgibbsmodel","intensity.zgibbsmodel","interactionorder.zgibbsmodel","is.poisson.zgibbsmodel","is.stationary.zgibbsmodel","methods.zgibbsmodel","print.zgibbsmodel"]},{"page":"mincontrast","title":"Method of Minimum Contrast","topics":["mincontrast"]},{"page":"model.depends","title":"Identify Covariates Involved in each Model Term","topics":["has.offset","has.offset.term","model.covariates","model.depends","model.is.additive"]},{"page":"model.frame.ppm","title":"Extract the Variables in a Point Process Model","topics":["model.frame.dppm","model.frame.kppm","model.frame.ppm","model.frame.slrm"]},{"page":"model.images","title":"Compute Images of Constructed Covariates","topics":["model.images","model.images.dppm","model.images.kppm","model.images.ppm","model.images.slrm"]},{"page":"model.matrix.mppm","title":"Extract Design Matrix of Point Process Model for Several Point Patterns","topics":["model.matrix.mppm"]},{"page":"model.matrix.ppm","title":"Extract Design Matrix from Point Process Model","topics":["model.matrix.dppm","model.matrix.ippm","model.matrix.kppm","model.matrix.ppm"]},{"page":"model.matrix.slrm","title":"Extract Design Matrix from Spatial Logistic Regression Model","topics":["model.matrix.slrm"]},{"page":"mppm","title":"Fit Point Process Model to Several Point Patterns","topics":["mppm"]},{"page":"msr","title":"Signed or Vector-Valued Measure","topics":["msr"]},{"page":"MultiHard","title":"The Multitype Hard Core Point Process Model","topics":["MultiHard"]},{"page":"MultiStrauss","title":"The Multitype Strauss Point Process Model","topics":["MultiStrauss"]},{"page":"MultiStraussHard","title":"The Multitype/Hard Core Strauss Point Process Model","topics":["MultiStraussHard"]},{"page":"npfun","title":"Dummy Function Returns Number of Points","topics":["npfun"]},{"page":"objsurf","title":"Objective Function Surface","topics":["objsurf","objsurf.dppm","objsurf.kppm","objsurf.minconfit"]},{"page":"Ops.msr","title":"Arithmetic Operations on Measures","topics":["Ops.msr"]},{"page":"Ord","title":"Generic Ord Interaction model","topics":["Ord"]},{"page":"ord.family","title":"Ord Interaction Process Family","topics":["ord.family"]},{"page":"OrdThresh","title":"Ord's Interaction model","topics":["OrdThresh"]},{"page":"PairPiece","title":"The Piecewise Constant Pairwise Interaction Point Process Model","topics":["PairPiece"]},{"page":"pairsat.family","title":"Saturated Pairwise Interaction Point Process 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determinantal point process","topics":["plot.dppm"]},{"page":"plot.influence.ppm","title":"Plot Influence Measure","topics":["plot.influence.ppm"]},{"page":"plot.kppm","title":"Plot a fitted cluster point process","topics":["plot.kppm"]},{"page":"plot.leverage.ppm","title":"Plot Leverage Function","topics":["contour.leverage.ppm","persp.leverage.ppm","plot.leverage.ppm"]},{"page":"plot.mppm","title":"plot a Fitted Multiple Point Process Model","topics":["plot.mppm"]},{"page":"plot.msr","title":"Plot a Signed or Vector-Valued Measure","topics":["plot.msr"]},{"page":"plot.palmdiag","title":"Plot the Palm Intensity Diagnostic","topics":["plot.palmdiag"]},{"page":"plot.plotppm","title":"Plot a plotppm Object Created by plot.ppm","topics":["plot.plotppm"]},{"page":"plot.ppm","title":"plot a Fitted Point Process Model","topics":["plot.ppm"]},{"page":"plot.profilepl","title":"Plot Profile Likelihood","topics":["plot.profilepl"]},{"page":"plot.rppm","title":"Plot a Recursively Partitioned Point Process Model","topics":["plot.rppm"]},{"page":"plot.slrm","title":"Plot a Fitted Spatial Logistic Regression","topics":["plot.slrm"]},{"page":"Poisson","title":"Poisson Point Process Model","topics":["Poisson"]},{"page":"polynom","title":"Polynomial in One or Two Variables","topics":["polynom"]},{"page":"ppm","title":"Fit Point Process Model to Data","topics":["ppm","ppm.formula"]},{"page":"ppm.object","title":"Class of Fitted Point Process Models","topics":["methods.ppm","ppm.object"]},{"page":"ppm.ppp","title":"Fit Point Process Model to Point Pattern Data","topics":["ppm.ppp","ppm.quad"]},{"page":"ppmInfluence","title":"Leverage and Influence Measures for Spatial Point Process Model","topics":["ppmInfluence"]},{"page":"predict.dppm","title":"Prediction from a Fitted Determinantal Point Process Model","topics":["fitted.dppm","predict.dppm"]},{"page":"predict.kppm","title":"Prediction from a Fitted Cluster Point Process Model","topics":["fitted.kppm","predict.kppm"]},{"page":"predict.mppm","title":"Prediction for Fitted Multiple Point Process Model","topics":["predict.mppm"]},{"page":"predict.ppm","title":"Prediction from a Fitted Point Process Model","topics":["predict.ppm"]},{"page":"predict.rppm","title":"Make Predictions From a Recursively Partitioned Point Process Model","topics":["fitted.rppm","predict.rppm"]},{"page":"predict.slrm","title":"Predicted or Fitted Values from Spatial Logistic Regression","topics":["predict.slrm"]},{"page":"print.ppm","title":"Print a Fitted Point Process Model","topics":["print.ppm"]},{"page":"profilepl","title":"Fit Models by Profile Maximum Pseudolikelihood or AIC","topics":["profilepl"]},{"page":"prune.rppm","title":"Prune a Recursively Partitioned Point Process Model","topics":["prune.rppm"]},{"page":"pseudoR2","title":"Calculate Pseudo-R-Squared for Point Process Model","topics":["pseudoR2","pseudoR2.ppm","pseudoR2.slrm"]},{"page":"psib","title":"Sibling Probability of Cluster Point Process","topics":["psib","psib.kppm"]},{"page":"psst","title":"Pseudoscore Diagnostic For Fitted Model against General Alternative","topics":["psst"]},{"page":"psstA","title":"Pseudoscore Diagnostic For Fitted Model against Area-Interaction Alternative","topics":["psstA"]},{"page":"psstG","title":"Pseudoscore Diagnostic For Fitted Model against Saturation Alternative","topics":["psstG"]},{"page":"qqplot.ppm","title":"Q-Q Plot of Residuals from Fitted Point Process Model","topics":["qqplot.ppm"]},{"page":"quad.ppm","title":"Extract Quadrature Scheme Used to Fit a Point Process Model","topics":["quad.ppm"]},{"page":"quadrat.test.mppm","title":"Chi-Squared Test for Multiple Point Process Model Based on Quadrat Counts","topics":["quadrat.test.mppm"]},{"page":"quadrat.test","title":"Dispersion Test for Spatial Point Pattern Based on Quadrat Counts","topics":["quadrat.test.ppm","quadrat.test.slrm"]},{"page":"ranef.mppm","title":"Extract Random Effects from Point Process Model","topics":["ranef.mppm"]},{"page":"rdpp","title":"Simulation of a Determinantal Point Process","topics":["rdpp"]},{"page":"reach","title":"Interaction Distance of a Point Process Model","topics":["reach.fii","reach.interact","reach.ppm"]},{"page":"reach.dppm","title":"Range of Interaction for a Determinantal Point Process Model","topics":["reach.detpointprocfamily","reach.dppm"]},{"page":"reach.kppm","title":"Range of Interaction for a Cox or Cluster Point Process Model","topics":["reach.kppm"]},{"page":"relrisk.ppm","title":"Parametric Estimate of Spatially-Varying Relative Risk","topics":["relrisk.ppm"]},{"page":"repul","title":"Repulsiveness Index of a Determinantal Point Process Model","topics":["repul","repul.dppm"]},{"page":"residualMeasure","title":"Residual Measure for an Observed Point Pattern and a Fitted Intensity","topics":["residualMeasure"]},{"page":"residuals.dppm","title":"Residuals for Fitted Determinantal Point Process Model","topics":["residuals.dppm"]},{"page":"residuals.kppm","title":"Residuals for Fitted Cox or Cluster Point Process Model","topics":["residuals.kppm"]},{"page":"residuals.mppm","title":"Residuals for Point Process Model Fitted to Multiple Point Patterns","topics":["residuals.mppm"]},{"page":"residuals.ppm","title":"Residuals for Fitted Point Process Model","topics":["residuals.ppm"]},{"page":"residuals.rppm","title":"Residuals for Recursively Partitioned Point Process Model","topics":["residuals.rppm"]},{"page":"residuals.slrm","title":"Residuals for Fitted Spatial Logistic Regression Model","topics":["residuals.slrm"]},{"page":"response","title":"Extract the Values of the Response from a Fitted Model","topics":["response","response.dppm","response.glm","response.kppm","response.lm","response.mppm","response.ppm","response.rppm","response.slrm"]},{"page":"rex","title":"Richardson Extrapolation","topics":["rex"]},{"page":"rhohat","title":"Nonparametric Estimate of Intensity as Function of a Covariate","topics":["rhohat.ppm","rhohat.slrm"]},{"page":"rmh.ppm","title":"Simulate from a Fitted Point Process Model","topics":["rmh.ppm"]},{"page":"rmhmodel.ppm","title":"Interpret Fitted Model for Metropolis-Hastings Simulation.","topics":["rmhmodel.ppm"]},{"page":"roc","title":"Receiver Operating Characteristic","topics":["roc.kppm","roc.ppm","roc.slrm"]},{"page":"rppm","title":"Recursively Partitioned Point Process Model","topics":["rppm"]},{"page":"SatPiece","title":"Piecewise Constant Saturated Pairwise Interaction Point Process Model","topics":["SatPiece"]},{"page":"Saturated","title":"Saturated Pairwise Interaction model","topics":["Saturated"]},{"page":"simulate.dppm","title":"Simulation of Determinantal Point Process Model","topics":["simulate.detpointprocfamily","simulate.dppm"]},{"page":"simulate.kppm","title":"Simulate a Fitted Cluster Point Process Model","topics":["simulate.kppm"]},{"page":"simulate.mppm","title":"Simulate a Point Process Model Fitted to Several Point Patterns","topics":["simulate.mppm"]},{"page":"simulate.ppm","title":"Simulate a Fitted Gibbs Point Process Model","topics":["simulate.ppm"]},{"page":"simulate.slrm","title":"Simulate a Fitted Spatial Logistic Regression Model","topics":["simulate.slrm"]},{"page":"slrm","title":"Spatial Logistic Regression","topics":["slrm"]},{"page":"Smooth.msr","title":"Smooth a Signed or Vector-Valued Measure","topics":["Smooth.msr"]},{"page":"Softcore","title":"The Soft Core Point Process Model","topics":["Softcore"]},{"page":"split.msr","title":"Divide a Measure into Parts","topics":["split.msr"]},{"page":"Strauss","title":"The Strauss Point Process Model","topics":["Strauss"]},{"page":"StraussHard","title":"The Strauss / Hard Core Point Process Model","topics":["StraussHard"]},{"page":"subfits","title":"Extract List of Individual Point Process Models","topics":["subfits","subfits.new","subfits.old"]},{"page":"suffstat","title":"Sufficient Statistic of Point Process Model","topics":["suffstat"]},{"page":"summary.dppm","title":"Summarizing a Fitted Determinantal Point Process Model","topics":["print.summary.dppm","summary.dppm"]},{"page":"summary.kppm","title":"Summarizing a Fitted Cox or Cluster Point Process Model","topics":["print.summary.kppm","summary.kppm"]},{"page":"summary.ppm","title":"Summarizing a Fitted Point Process Model","topics":["print.summary.ppm","summary.ppm"]},{"page":"thomas.estK","title":"Fit the Thomas Point Process by Minimum Contrast","topics":["thomas.estK"]},{"page":"thomas.estpcf","title":"Fit the Thomas Point Process by Minimum Contrast","topics":["thomas.estpcf"]},{"page":"traj","title":"Extract trajectory of function evaluations","topics":["traj"]},{"page":"triplet.family","title":"Triplet Interaction Family","topics":["triplet.family"]},{"page":"Triplets","title":"The Triplet Point Process Model","topics":["Triplets"]},{"page":"unitname","title":"Name for Unit of Length","topics":["unitname.dppm","unitname.kppm","unitname.minconfit","unitname.ppm","unitname.slrm","unitname<-.dppm","unitname<-.kppm","unitname<-.minconfit","unitname<-.ppm","unitname<-.slrm"]},{"page":"unstack.msr","title":"Separate a Vector Measure into its Scalar Components","topics":["unstack.msr"]},{"page":"update.detpointprocfamily","title":"Set Parameter Values in a Determinantal Point Process Model","topics":["update.detpointprocfamily"]},{"page":"update.dppm","title":"Update a Fitted Determinantal Point Process Model","topics":["update.dppm"]},{"page":"update.interact","title":"Update an Interpoint Interaction","topics":["update.interact"]},{"page":"update.kppm","title":"Update a Fitted Cluster Point Process Model","topics":["update.kppm"]},{"page":"update.ppm","title":"Update a Fitted Point Process Model","topics":["update.ppm"]},{"page":"update.rppm","title":"Update a Recursively Partitioned Point Process Model","topics":["update.rppm"]},{"page":"valid","title":"Check Whether Point Process Model is Valid","topics":["valid"]},{"page":"valid.detpointprocfamily","title":"Check Validity of a Determinantal Point Process Model","topics":["valid.detpointprocfamily"]},{"page":"valid.ppm","title":"Check Whether Point Process Model is Valid","topics":["valid.ppm"]},{"page":"valid.slrm","title":"Check Whether Spatial Logistic Regression Model is Valid","topics":["valid.slrm"]},{"page":"varcount","title":"Predicted Variance of the Number of Points","topics":["varcount"]},{"page":"vargamma.estK","title":"Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel","topics":["vargamma.estK"]},{"page":"vargamma.estpcf","title":"Fit the Neyman-Scott Cluster Point Process with Variance Gamma kernel","topics":["vargamma.estpcf"]},{"page":"vcov.kppm","title":"Variance-Covariance Matrix for a Fitted Cluster Point Process Model","topics":["vcov.kppm"]},{"page":"vcov.mppm","title":"Calculate Variance-Covariance Matrix for Fitted Multiple Point Process Model","topics":["vcov.mppm"]},{"page":"vcov.ppm","title":"Variance-Covariance Matrix for a Fitted Point Process Model","topics":["vcov.ppm"]},{"page":"vcov.slrm","title":"Variance-Covariance Matrix for a Fitted Spatial Logistic Regression","topics":["vcov.slrm"]},{"page":"Window.ppm","title":"Extract Window of Spatial Object","topics":["Window.dppm","Window.kppm","Window.msr","Window.ppm","Window.slrm"]},{"page":"with.msr","title":"Evaluate Expression Involving Components of a Measure","topics":["with.msr"]},{"page":"zclustermodel","title":"Cluster Point Process Model","topics":["zclustermodel"]},{"page":"zgibbsmodel","title":"Gibbs Model","topics":["zgibbsmodel"]}],"_readme":"https://github.com/spatstat/spatstat.model/raw/HEAD/README.md","_rundeps":["abind","deldir","goftest","lattice","Matrix","mgcv","nlme","polyclip","rpart","spatstat.data","spatstat.explore","spatstat.geom","spatstat.random","spatstat.sparse","spatstat.univar","spatstat.utils","tensor"],"_score":8.94102543671808,"_indexed":true,"_nocasepkg":"spatstat.model","_universes":["spatstat","baddstats"],"_binaries":[]} {"Package":"spatstat","Version":"3.3-0","Date":"2024-11-20","Title":"Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests","Authors@R":"c(person(\"Adrian\", \"Baddeley\", \nrole = c(\"aut\", \"cre\"),\nemail = \"Adrian.Baddeley@curtin.edu.au\",\ncomment = c(ORCID=\"0000-0001-9499-8382\")),\nperson(\"Rolf\", \"Turner\",\nrole = \"aut\",\nemail=\"rolfturner@posteo.net\",\ncomment=c(ORCID=\"0000-0001-5521-5218\")),\nperson(\"Ege\", \"Rubak\",\nrole = \"aut\",\nemail = \"rubak@math.aau.dk\",\ncomment=c(ORCID=\"0000-0002-6675-533X\")))","Maintainer":"Adrian Baddeley ","Description":"Comprehensive open-source toolbox for analysing Spatial\nPoint Patterns. Focused mainly on two-dimensional point\npatterns, including multitype/marked points, in any spatial\nregion. Also supports three-dimensional point patterns,\nspace-time point patterns in any number of dimensions, point\npatterns on a linear network, and patterns of other geometrical\nobjects. Supports spatial covariate data such as pixel images.\nContains over 3000 functions for plotting spatial data,\nexploratory data analysis, model-fitting, simulation, spatial\nsampling, model diagnostics, and formal inference. Data types\ninclude point patterns, line segment patterns, spatial windows,\npixel images, tessellations, and linear networks. Exploratory\nmethods include quadrat counts, K-functions and their\nsimulation envelopes, nearest neighbour distance and empty\nspace statistics, Fry plots, pair correlation function, kernel\nsmoothed intensity, relative risk estimation with\ncross-validated bandwidth selection, mark correlation\nfunctions, segregation indices, mark dependence diagnostics,\nand kernel estimates of covariate effects. Formal hypothesis\ntests of random pattern (chi-squared, Kolmogorov-Smirnov, Monte\nCarlo, Diggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage\nMonte Carlo) and tests for covariate effects\n(Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also\nsupported. Parametric models can be fitted to point pattern\ndata using the functions ppm(), kppm(), slrm(), dppm() similar\nto glm(). Types of models include Poisson, Gibbs and Cox point\nprocesses, Neyman-Scott cluster processes, and determinantal\npoint processes. Models may involve dependence on covariates,\ninter-point interaction, cluster formation and dependence on\nmarks. Models are fitted by maximum likelihood, logistic\nregression, minimum contrast, and composite likelihood methods.\nA model can be fitted to a list of point patterns (replicated\npoint pattern data) using the function mppm(). The model can\ninclude random effects and fixed effects depending on the\nexperimental design, in addition to all the features listed\nabove. Fitted point process models can be simulated,\nautomatically. Formal hypothesis tests of a fitted model are\nsupported (likelihood ratio test, analysis of deviance, Monte\nCarlo tests) along with basic tools for model selection\n(stepwise(), AIC()) and variable selection (sdr). Tools for\nvalidating the fitted model include simulation envelopes,\nresiduals, residual plots and Q-Q plots, leverage and influence\ndiagnostics, partial residuals, and added variable plots.","License":"GPL (>= 2)","URL":"http://spatstat.org/","NeedsCompilation":"yes","ByteCompile":"true","BugReports":"https://github.com/spatstat/spatstat/issues","Repository":"https://spatstat.r-universe.dev","RemoteUrl":"https://github.com/spatstat/spatstat","RemoteRef":"HEAD","RemoteSha":"4b50cebe0df3013222dff9a4f237cf2f0932e9c1","Packaged":{"Date":"2024-12-27 02:42:09 UTC","User":"root"},"Author":"Adrian Baddeley [aut, cre] (),\nRolf Turner [aut] (),\nEge Rubak [aut] 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\"Cronie\",\nrole = \"ctb\"))","Maintainer":"Adrian Baddeley ","Description":"Defines types of spatial data on a linear network and\nprovides functionality for geometrical operations, data\nanalysis and modelling of data on a linear network, in the\n'spatstat' family of packages. Contains definitions and support\nfor linear networks, including creation of networks,\ngeometrical measurements, topological connectivity, geometrical\noperations such as inserting and deleting vertices,\nintersecting a network with another object, and interactive\nediting of networks. Data types defined on a network include\npoint patterns, pixel images, functions, and tessellations.\nExploratory methods include kernel estimation of intensity on a\nnetwork, K-functions and pair correlation functions on a\nnetwork, simulation envelopes, nearest neighbour distance and\nempty space distance, relative risk estimation with\ncross-validated bandwidth selection. Formal hypothesis tests of\nrandom pattern (chi-squared, Kolmogorov-Smirnov, Monte Carlo,\nDiggle-Cressie-Loosmore-Ford, Dao-Genton, two-stage Monte\nCarlo) and tests for covariate effects\n(Cox-Berman-Waller-Lawson, Kolmogorov-Smirnov, ANOVA) are also\nsupported. Parametric models can be fitted to point pattern\ndata using the function lppm() similar to glm(). Only Poisson\nmodels are implemented so far. Models may involve dependence on\ncovariates and dependence on marks. Models are fitted by\nmaximum likelihood. Fitted point process models can be\nsimulated, automatically. Formal hypothesis tests of a fitted\nmodel are supported (likelihood ratio test, analysis of\ndeviance, Monte Carlo tests) along with basic tools for model\nselection (stepwise(), AIC()) and variable selection (sdr).\nTools for validating the fitted model include simulation\nenvelopes, residuals, residual plots and Q-Q plots, leverage\nand influence diagnostics, partial residuals, and added\nvariable plots. Random point patterns on a network can be\ngenerated using a variety of models.","License":"GPL (>= 2)","URL":"http://spatstat.org/","NeedsCompilation":"yes","ByteCompile":"true","BugReports":"https://github.com/spatstat/spatstat.linnet/issues","Repository":"https://spatstat.r-universe.dev","RemoteUrl":"https://github.com/spatstat/spatstat.linnet","RemoteRef":"HEAD","RemoteSha":"ef0a898e67ce9c4ff76d06c0cd40c273d6ecbd00","Packaged":{"Date":"2024-12-19 05:53:39 UTC","User":"root"},"Author":"Adrian Baddeley [aut, cre, cph]\n(),\nRolf Turner [aut, cph] (),\nEge Rubak [aut, cph] (),\nGreg McSwiggan [aut, cph],\nTilman Davies [ctb, cph],\nMehdi Moradi [ctb, cph],\nSuman Rakshit [ctb, cph],\nOttmar Cronie 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